PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AA96G00030
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Aethionemeae; Aethionema
Family MYB
Protein Properties Length: 338aa    MW: 37759.2 Da    PI: 6.6645
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AA96G00030genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv ++++ G+g+W++++   g++R+ k+c++rw +yl
       AA96G00030 14 KGPWTPEEDIILVSYIQENGPGNWRAVPTNTGLRRCSKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding48.71.8e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+ E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
       AA96G00030  67 RGNFTQHEEKMILHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-23564IPR009057Homeodomain-like
PROSITE profilePS5129425.042965IPR017930Myb domain
SuperFamilySSF466893.56E-3011108IPR009057Homeodomain-like
SMARTSM007171.0E-131363IPR001005SANT/Myb domain
PfamPF002491.6E-151461IPR001005SANT/Myb domain
CDDcd001672.49E-101661No hitNo description
Gene3DG3DSA:1.10.10.601.1E-2465117IPR009057Homeodomain-like
SMARTSM007173.7E-1566114IPR001005SANT/Myb domain
PROSITE profilePS5129419.166116IPR017930Myb domain
PfamPF002496.5E-1467112IPR001005SANT/Myb domain
CDDcd001679.37E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGRPPCCDKI GVKKGPWTPE EDIILVSYIQ ENGPGNWRAV PTNTGLRRCS KSCRLRWTNY  60
LRPGIKRGNF TQHEEKMILH LQALLGNRWA AIASYLPQRT DNDIKNYWNT HLKKKLKNMN  120
DSSDDINEDL ISSSTTNSRN QNQNRNQNIS SNKGQWEKRL QTDINLAKQA LCEALSIDKQ  180
QNPNFCLANL GNYGPSTSSS STTTTTSNTN QYPSGVYASS AENIGRLLQN FMKNTPNKSV  240
NLHSLPIAPT LEMAISSPST TEEGRGGGEG FDESFFSLNS MDGSTQDLTL ETKPKLMEDD  300
INGLVSQGSL SLLEKWLFDE QSHDMICNMS LEGPEVLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-25141164105C-Myb DNA-Binding Domain
1msf_C4e-25141164105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426206.11e-171PREDICTED: myb-related protein 306-like
SwissprotP813921e-106MYB06_ANTMA; Myb-related protein 306
TrEMBLQ9SN781e-169Q9SN78_ARATH; MYB transcription factor
STRINGAT3G47600.11e-168(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-150myb domain protein 94